Nah, it's also a protection against using the wrong interps with the wrong games. Phantas 2 is SCI3, whose script format is very different. While you could change the version stamp, script execution would not get very far at all (either an Oops or a crash...)
Even if you did, there's bound to be little annoying, glitch-causing differences which nobody has mapped out yet (though ScummVM will have to eventually).